{
  "_id": "6a4790da8b9f0d9747cf18b7",
  "Package": "SLEMI",
  "Title": "Statistical Learning Based Estimation of Mutual Information",
  "Version": "1.0.2",
  "Authors@R": "c(person(\"Tomasz\", \"Jetka\", email = \"t.jetka@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Karol\", \"Nienaltowski\",role=\"ctb\"),person(\"Michal\", \"Komorowski\",role=\"ctb\"))",
  "Description": "The implementation of the algorithm for estimation of\nmutual information and channel capacity from experimental data\nby classification procedures (logistic regression).\nTechnically, it allows to estimate information-theoretic\nmeasures between finite-state input and multivariate,\ncontinuous output. Method described in Jetka et al. (2019)\n<doi:10.1371/journal.pcbi.1007132>.",
  "License": "LGPL (>=2)",
  "URL": "https://github.com/TJetka/SLEMI",
  "BugReports": "https://github.com/TJetka/SLEMI/issues",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev",
  "Repository": "https://tjetka.r-universe.dev",
  "Date/Publication": "2023-11-19 18:27:48 UTC",
  "RemoteUrl": "https://github.com/tjetka/slemi",
  "RemoteRef": "HEAD",
  "RemoteSha": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-02 09:06:19 UTC",
    "User": "root"
  },
  "Author": "Tomasz Jetka [aut, cre],\nKarol Nienaltowski [ctb],\nMichal Komorowski [ctb]",
  "Maintainer": "Tomasz Jetka <t.jetka@gmail.com>",
  "_user": "tjetka",
  "_type": "src",
  "_file": "SLEMI_1.0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/d9cd6ed27fbd460eb2df9ab4a181e3f123d18e5744b48e1c61b215bfe8c0def6",
  "_filesize": 2657312,
  "_sha256": "d9cd6ed27fbd460eb2df9ab4a181e3f123d18e5744b48e1c61b215bfe8c0def6",
  "_expires": "2026-10-11T10:37:13.000Z",
  "_created": "2026-07-02T09:06:19.000Z",
  "_published": "2026-07-03T10:37:14.501Z",
  "_jobs": [
    {
      "job": 84982114656,
      "time": 166,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8034028320"
    },
    {
      "job": 84982114448,
      "time": 160,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8034026584"
    },
    {
      "job": 84982114994,
      "time": 166,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8034018328"
    },
    {
      "job": 84982114319,
      "time": 209,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8034029453"
    },
    {
      "job": 84982113753,
      "time": 214,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8033959893"
    },
    {
      "job": 84982114502,
      "time": 172,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8034031359"
    },
    {
      "job": 84982114707,
      "time": 89,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8033997113"
    },
    {
      "job": 84982114329,
      "time": 101,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8034002191"
    },
    {
      "job": 84982114189,
      "time": 97,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8034000621"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026",
  "_status": "success",
  "_upstream": "https://github.com/tjetka/slemi",
  "_commit": {
    "id": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
    "author": "Tomasz Jetka <t.jetka@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #3 from TJetka/2023_resolve_docs_issues\n\ndocs fix",
    "time": 1700418468
  },
  "_maintainer": {
    "name": "Tomasz Jetka",
    "email": "t.jetka@gmail.com",
    "login": "tjetka",
    "twitter": "@TJetka",
    "description": "Mathematician, BioInf, Researcher",
    "uuid": 8123319
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "e1071",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "nnet",
      "role": "Imports"
    },
    {
      "package": "Hmisc",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "corrplot",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 2.1.0",
      "role": "Suggests"
    },
    {
      "package": "data.table",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    }
  ],
  "_owner": "tjetka",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "channel-capacity",
    "information-theory",
    "logistic-regression",
    "mutual-information-estimation"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "tjetka",
      "count": 16,
      "uuid": 8123319
    }
  ],
  "_userbio": {
    "uuid": 8123319,
    "type": "user",
    "name": "Tomasz Jetka",
    "followers": 2,
    "description": "Mathematician, BioInf, Researcher"
  },
  "_downloads": {
    "count": 259,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SLEMI"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/tjetka/slemi",
  "_searchresults": 23,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SLEMI.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/tjetka/slemi",
  "_realowner": "tjetka",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2019-10-07"
    },
    {
      "version": "1.0.1",
      "date": "2021-02-22"
    },
    {
      "version": "1.0.2",
      "date": "2023-11-19"
    }
  ],
  "_exports": [
    "capacity_logreg_algorithm",
    "capacity_logreg_main",
    "capacity_logreg_testing",
    "mi_logreg_algorithm",
    "mi_logreg_main",
    "mi_logreg_testing",
    "prob_discr_pairwise"
  ],
  "_datasets": [
    {
      "name": "data_example1",
      "title": "Exemplary data set I",
      "object": "data_example1",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sideVar",
        "response",
        "signal"
      ],
      "rows": 1500,
      "table": true,
      "tojson": true
    },
    {
      "name": "data_example2",
      "title": "Exemplary data set II",
      "object": "data_example2",
      "class": [
        "data.frame"
      ],
      "fields": [
        "signal",
        "X1",
        "X2",
        "X3"
      ],
      "rows": 1500,
      "table": true,
      "tojson": true
    },
    {
      "name": "data_nfkb",
      "title": "Data from experiment with NFkB pathway",
      "object": "data_nfkb",
      "class": [
        "data.frame"
      ],
      "fields": [
        "signal",
        "response_0",
        "response_3",
        "response_21",
        "response_90",
        "response_120"
      ],
      "rows": 15632,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "capacity_logreg_algorithm",
      "title": "Main algorithm to calculate channel capacity by SLEMI approach",
      "topics": [
        "capacity_logreg_algorithm"
      ]
    },
    {
      "page": "capacity_logreg_main",
      "title": "Estimate channel capacity between discrete input and continuous output",
      "topics": [
        "capacity_logreg_main"
      ]
    },
    {
      "page": "data_nfkb",
      "title": "Data from experiment with NFkB pathway",
      "topics": [
        "data_nfkb"
      ]
    },
    {
      "page": "mi_logreg_algorithm",
      "title": "Main algorithm to calculate mutual information by SLEMI approach",
      "topics": [
        "mi_logreg_algorithm"
      ]
    },
    {
      "page": "mi_logreg_main",
      "title": "Estimate mutual information between discrete input and continuous output",
      "topics": [
        "mi_logreg_main"
      ]
    },
    {
      "page": "prob_discr_pairwise",
      "title": "Calculates Probability of pairwise discrimination",
      "topics": [
        "prob_discr_pairwise"
      ]
    }
  ],
  "_readme": "https://github.com/tjetka/slemi/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "base64enc",
    "bslib",
    "cachem",
    "caret",
    "checkmate",
    "class",
    "cli",
    "clock",
    "cluster",
    "codetools",
    "colorspace",
    "corrplot",
    "cpp11",
    "data.table",
    "diagram",
    "digest",
    "doParallel",
    "dplyr",
    "e1071",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "foreach",
    "foreign",
    "Formula",
    "fs",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "globals",
    "glue",
    "gower",
    "gridExtra",
    "gtable",
    "hardhat",
    "highr",
    "Hmisc",
    "htmlTable",
    "htmltools",
    "htmlwidgets",
    "ipred",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "lattice",
    "lava",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "ModelMetrics",
    "nlme",
    "nnet",
    "numDeriv",
    "parallelly",
    "pillar",
    "pkgconfig",
    "plyr",
    "pROC",
    "prodlim",
    "progressr",
    "proxy",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "recipes",
    "reshape2",
    "rlang",
    "rmarkdown",
    "rpart",
    "rstudioapi",
    "S7",
    "sass",
    "scales",
    "shape",
    "sparsevctrs",
    "SQUAREM",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tinytex",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "vignette.Rmd",
      "filename": "vignette.html",
      "title": "Statistical Learning based Estimation of the Mutual Information (SLEMI) - R package",
      "author": "T. Jetka^[author and maintainer, please contact via t.jetka a t gmail.com], K. Nienałtowski, M. Komorowski",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Preliminaries",
        "Requirements - Hardware",
        "Requirements - Software",
        "Installation",
        "Citing and support",
        "Structure of the package",
        "Formulation of the problem",
        "Input data",
        "Calculation of the information capacity",
        "Calculation of the mutual information",
        "Calculation of the probabilities of correct discrimination",
        "Diagnostic procedures",
        "Additional functionalities of the function capacity_logreg_main()",
        "Examples",
        "Minimal example",
        "signal=\"signal\",response=\"response\", #side_variables = NULL, testing=TRUE, TestingSeed = 1234, testing_cores = 6,",
        "boot_num = 30, boot_prob = 0.8,",
        "sidevar_num = 6,",
        "traintest_num = 30,partition_trainfrac = 0.6)",
        "#```",
        "Further step-by-step introductory examples",
        "Examples in paper",
        "Session Info",
        "References"
      ],
      "created": "2020-12-15 08:19:45",
      "modified": "2023-11-19 18:27:48",
      "commits": 4
    }
  ],
  "_score": 4.963787827345556,
  "_indexed": true,
  "_nocasepkg": "slemi",
  "_universes": [
    "tjetka"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-07-02T09:08:52.000Z",
      "distro": "resolute",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/133020e5cf704b923d96778bbf3a064112e3310ceea066848b6b1cfb1d868e9b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-07-02T09:08:49.000Z",
      "distro": "resolute",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/eb65ce454b86deb48836619b1e5c3b3ecfca4171bc5c6bb8168b5290f2ee90a8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-07-02T09:08:37.000Z",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/125e5ff9ffcf8f585b03d0adbee53bfb8f0409fb66ad79f11ad890ec3e28278b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-07-02T09:09:00.000Z",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/94c8efabbeade4d62a74d969e3749ec0727e499218ce517bae37062969bba23f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-07-02T09:09:27.000Z",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/399c0b97b23fa976cb22c9c1a98bf05ece1ca9d3055e663cea41730ddbc3009b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-07-02T09:07:29.000Z",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/6a8ea649dea5cff8b4f125dca11a13487a6b6d9578c64a3c7dd73ec318c88495",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-07-02T09:07:41.000Z",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/692375dbb9b100946da2b9f2f8df2b33b558055054dc56b701665178fe0351b6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-07-02T09:07:39.000Z",
      "commit": "41d194fc031aa7b51d6d65e06ad3037f6e5d2251",
      "fileid": "https://r2.ropensci.org/dacff880d1f03d8561ae6a35c336352caad60d7e943554528a936fe20eb7c229",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/tjetka/actions/runs/28578310026"
    }
  ]
}