Package: SLEMI 1.0.2

SLEMI: Statistical Learning Based Estimation of Mutual Information

The implementation of the algorithm for estimation of mutual information and channel capacity from experimental data by classification procedures (logistic regression). Technically, it allows to estimate information-theoretic measures between finite-state input and multivariate, continuous output. Method described in Jetka et al. (2019) <doi:10.1371/journal.pcbi.1007132>.

Authors:Tomasz Jetka [aut, cre], Karol Nienaltowski [ctb], Michal Komorowski [ctb]

SLEMI_1.0.2.tar.gz
SLEMI_1.0.2.zip(r-4.7)SLEMI_1.0.2.zip(r-4.6)SLEMI_1.0.2.zip(r-4.5)
SLEMI_1.0.2.tgz(r-4.6-any)SLEMI_1.0.2.tgz(r-4.5-any)
SLEMI_1.0.2.tar.gz(r-4.7-any)SLEMI_1.0.2.tar.gz(r-4.6-any)
SLEMI_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SLEMI/json (API)
NEWS

# Install 'SLEMI' in R:

install.packages('SLEMI', repos = c('https://tjetka.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tjetka/slemi/issues

Datasets:

data_nfkb - Data from experiment with NFkB pathway

On CRAN:

channel-capacity information-theory logistic-regression mutual-information-estimation

4.92 score 4 stars 21 scripts 171 downloads 2 mentions 7 exports 106 dependencies

Last updated from:41d194fc03. Checks:7 NOTE, 1 OK, 1 FAIL. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	145
source / vignettes	OK	198
linux-release-x86_64	NOTE	151
macos-release-arm64	NOTE	235
macos-oldrel-arm64	NOTE	140
windows-devel	NOTE	112
windows-release	NOTE	86
windows-oldrel	NOTE	118
wasm-release	FAIL	1431

Exports:capacity_logreg_algorithm capacity_logreg_main capacity_logreg_testing mi_logreg_algorithm mi_logreg_main mi_logreg_testing prob_discr_pairwise

Dependencies:backports base64enc bslib cachem caret checkmate class cli clock cluster codetools colorspace corrplot cpp11 data.table diagram digest doParallel dplyr e1071 evaluate farver fastmap fontawesome foreach foreign Formula fs future future.apply generics ggplot2 globals glue gower gridExtra gtable hardhat highr Hmisc htmlTable htmltools htmlwidgets ipred isoband iterators jquerylib jsonlite KernSmooth knitr labeling lattice lava lifecycle listenv lubridate magrittr MASS Matrix memoise mime ModelMetrics nlme nnet numDeriv parallelly pillar pkgconfig plyr pROC prodlim progressr proxy purrr R6 rappdirs RColorBrewer Rcpp recipes reshape2 rlang rmarkdown rpart rstudioapi S7 sass scales shape sparsevctrs SQUAREM stringi stringr survival tibble tidyr tidyselect timechange timeDate tinytex tzdb utf8 vctrs viridisLite withr xfun yaml

Statistical Learning based Estimation of the Mutual Information (SLEMI) - R package

T. Jetka^[author and maintainer, please contact via t.jetka a t gmail.com], K. Nienałtowski, M. Komorowski

Rendered fromvignette.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2023-11-19
Started: 2020-12-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Main algorithm to calculate channel capacity by SLEMI approach	capacity_logreg_algorithm
Estimate channel capacity between discrete input and continuous output	capacity_logreg_main
Data from experiment with NFkB pathway	data_nfkb
Main algorithm to calculate mutual information by SLEMI approach	mi_logreg_algorithm
Estimate mutual information between discrete input and continuous output	mi_logreg_main
Calculates Probability of pairwise discrimination	prob_discr_pairwise