Package: SLEMI 1.0.2

SLEMI: Statistical Learning Based Estimation of Mutual Information

The implementation of the algorithm for estimation of mutual information and channel capacity from experimental data by classification procedures (logistic regression). Technically, it allows to estimate information-theoretic measures between finite-state input and multivariate, continuous output. Method described in Jetka et al. (2019) <doi:10.1371/journal.pcbi.1007132>.

Authors:Tomasz Jetka [aut, cre], Karol Nienaltowski [ctb], Michal Komorowski [ctb]

SLEMI_1.0.2.tar.gz
SLEMI_1.0.2.zip(r-4.5)SLEMI_1.0.2.zip(r-4.4)SLEMI_1.0.2.zip(r-4.3)
SLEMI_1.0.2.tgz(r-4.5-any)SLEMI_1.0.2.tgz(r-4.4-any)SLEMI_1.0.2.tgz(r-4.3-any)
SLEMI_1.0.2.tar.gz(r-4.5-noble)SLEMI_1.0.2.tar.gz(r-4.4-noble)
SLEMI_1.0.2.tgz(r-4.4-emscripten)SLEMI_1.0.2.tgz(r-4.3-emscripten)
SLEMI.pdf |SLEMI.html
SLEMI/json (API)
NEWS

# Install 'SLEMI' in R:
install.packages('SLEMI', repos = c('https://tjetka.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tjetka/slemi/issues

Datasets:
  • data_nfkb - Data from experiment with NFkB pathway

On CRAN:

Conda-Forge:

channel-capacityinformation-theorylogistic-regressionmutual-information-estimation

4.92 score 4 stars 21 scripts 245 downloads 2 mentions 7 exports 109 dependencies

Last updated 1 years agofrom:41d194fc03. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 11 2025
R-4.5-winNOTEFeb 11 2025
R-4.5-macNOTEFeb 11 2025
R-4.5-linuxNOTEFeb 11 2025
R-4.4-winNOTEFeb 11 2025
R-4.4-macNOTEFeb 11 2025
R-4.3-winNOTEFeb 11 2025
R-4.3-macNOTEFeb 11 2025

Exports:capacity_logreg_algorithmcapacity_logreg_maincapacity_logreg_testingmi_logreg_algorithmmi_logreg_mainmi_logreg_testingprob_discr_pairwise

Dependencies:backportsbase64encbslibcachemcaretcheckmateclasscliclockclustercodetoolscolorspacecorrplotcpp11data.tablediagramdigestdoParalleldplyre1071evaluatefansifarverfastmapfontawesomeforeachforeignFormulafsfuturefuture.applygenericsggplot2globalsgluegowergridExtragtablehardhathighrHmischtmlTablehtmltoolshtmlwidgetsipredisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivparallellypillarpkgconfigplyrpROCprodlimprogressrproxypurrrR6rappdirsRColorBrewerRcpprecipesreshape2rlangrmarkdownrpartrstudioapisassscalesshapesparsevctrsSQUAREMstringistringrsurvivaltibbletidyrtidyselecttimechangetimeDatetinytextzdbutf8vctrsviridisviridisLitewithrxfunyaml

Statistical Learning based Estimation of the Mutual Information (SLEMI) - R package

Rendered fromvignette.Rmdusingknitr::rmarkdownon Feb 11 2025.

Last update: 2023-11-19
Started: 2020-12-15